A good quality and well set up sub should always enhance a two channel system's sound. My small towers are nearly flat to the low 30s and an REL Britannia B1 sub 'opened' up the room and subtlety made the lowest bass a solid musical foundation.
I've since move to four good quality subs in a distributed bass array in the 16 x 21 x 10 room and you'll never know where they are; they are so low. With a bit of room bass correction it works quite well. I still need to high-pass mains for better sound and dynamics by relieving them of the low bass load. My bad so far...
As for the 'boom', I'd sure try a sock, and positioning, and crossover frequency and level. I always had better success passing very low (30-40s) and using a tad more volume. It depends on the mains.