To rule out a speaker being wired incorrectly internally and assuming you have your speakers hooked up correctly, just play tracks 22 and 25 from this — no need to mess with resistors and such. Left should be left, center should be center, and right should be right and if all that lines up your phase is fine. I continue to think it’s break in, but you should consult your dealer to get their thoughts as well.
http://www.youtube.com/playlist?list=OLAK5uy_ndrls3SVVIl_vwa6lSQILyH7DnQGCevqg

