I'm not familiar with that particular receiver or those subs, but with most receivers, there are ways to activate or deactivate the subs and also the
listening
mode you've selected may affect whether the subs are active or not. Double check all that. Worst case, just leave the subs turned on.
"I rewired them using the speaker level inputs coming straight from the amp."
Try using a regular subwoofer cable and see if they are triggered then.
"I rewired them using the speaker level inputs coming straight from the amp."
Try using a regular subwoofer cable and see if they are triggered then.