I've found a combination of things that result in an acceptable solution.
Sense has a Delay setting that addresses it most of the time but is not effective with Quboz Connect which I like to use with playlists because it shows on my phone lock screen. Innuos support says that feature will be available in Sense soon so I look forward to that.
But the BDA-3 has an Upsample Mode that converts everything internally and that, combined with the Pulse delay solves the issue. The only minor drawback is this is only available with SPDIF inputs, not USB. That's ok because I have an excellent coax cable with a BNC connector and that's what Bryston recommends.
Back to the music!

