Looks like the signal to your sub is just too low to trigger it to turn on. You will probably need to leave it on when you will be using it, ie not in auto mode.
Why aren't my subs turning on?
I have a pair of Von Schweikert VS-3/S subs. Auto-on appears to be the only option, but they do not turn on unless I manually turn them off and then on? They are being fed from the line level (called LFE) outputs of an SMS-1. One to each sub. Both were purchased used from diff owners; hard to believe that they both are independently defective in the same way. They both play when I run the auto-eq frequency sweep. I am sending same question to VS, but your thoughts would help. TIA.