Could you please describe how the measurements were taken.
From looking at the graphs I don't see how you could describe the response as muted. The most prominent features show a recessed lower bass/midrange and an elevated upper midrange with a smooth treble. If anything, I suspect your system sounds slightly forward.
One question you really need to ask yourself is whether you really want flat response at the listening position. Smooth response, yes, but flat will sound very bright. If you're adventurous I recommend you get a parametric EQ and experiment. Use it to reduce the peaks in the room response and play with shelving the treble response to see what you think.
From looking at the graphs I don't see how you could describe the response as muted. The most prominent features show a recessed lower bass/midrange and an elevated upper midrange with a smooth treble. If anything, I suspect your system sounds slightly forward.
One question you really need to ask yourself is whether you really want flat response at the listening position. Smooth response, yes, but flat will sound very bright. If you're adventurous I recommend you get a parametric EQ and experiment. Use it to reduce the peaks in the room response and play with shelving the treble response to see what you think.