One thing to check out is the issue of drive offset numbers. If I remember correctly, iTunes gives you no control over the drive offset and EAC and dBpoweramp both do. When I played with this a while ago, once I got EAC and iTunes to use the same drive offset, then the WAV files compared exactly. If I remember correctly, I had to set it to 0 in EAC to get EAC and iTUnes to produce exactly the same files. Not sure if I compared dBpoweramp at that time. But it something to consider.
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